2011

November/December 2011
  • Gray AN (recent grad), Henderson-Frost JM, Boyd D, Shirafi S, Niki H, Goldberg MB. Unbalanced charge distribution as a determinant for dependence of a subset of E. coli membrane proteins on the membrane insertase YidC. mBio. Accepted.
  • Janas MM (G5), Khaled M, Schubert S, Bernstein JG, Golan D, et al. (2011) Feed-Forward Microprocessing and Splicing Activities at a MicroRNA–Containing Intron. PLoS Genet. 2011 Sept. On Pubmed.
  • Koussa MA (G1), Tolbert LP, Oland LA. Development of a glial network in the olfactory nerve: role of calcium and neuronal activity. Neuron Glia Biol. 2011 Sep 21. [Epub ahead of print] On Pubmed.
  • Sebastiano V, Maeder ML (G4), Angstman JF, Haddad B, Khayter C, Yeo DT, Goodwin MJ, Hawkins JS, Ramirez CL (G6), Batista LF, Artandi SE, Wernig M, Joung JK. In situ genetic correction of the sickle cell anemia mutation in human induced pluripotent stem cells using engineered zinc finger nucleases. Stem Cells. 2011 Nov 29. On Pubmed.
  • Sander JD, Maeder ML (G4), Joung JK. Engineering designer nucleases with customized cleavage specificities. Curr Protoc Mol Biol. 2011 Oct. On Pubmed.
  • Lee J, Hirsh AS, Wittner BS, Maeder ML (G4), Singavarapu R, Lang M, Janarthanan S, McDermott U, Yajnik V, Ramaswamy S, Joung JK, Sgroi DC. Induction of stable drug resistance in human breast cancer cells using a combinatorial zinc finger transcription factor library. PLoS One. 2011. Epub 2011 Jul 19. On Pubmed.
  • Rahman SH, Maeder ML (G4), Joung JK, Cathomen T. Zinc-finger nucleases for somatic gene therapy: the next frontier. Hum Gene Ther. 2011 Aug. Epub 2011 Jul 22. On Pubmed.
  • Marotta LLC (recent grad) and Polyak K. (2011). Unraveling the complexity of basal-like breast cancer. Oncotarget. 2011 Aug. On Pubmed.
  • Park E (G6) and Rapoport TA. Preserving the membrane barrier for small molecules during bacterial protein translocation. Nature. 2011 May 12. On Pubmed.
  • Pattanayak V, Ramirez CL (G6), Joung JK, Liu DR. Revealing off-target cleavage specificities of zinc-finger nucleases by in vitro selection. Nat Methods. 2011 Aug 7. On Pubmed.
  • Sikorski TW (recent grad), Ficarro SB, Holik J, Kim TS, Rando OJ, Marto JA, Buratowski S. Sub1 and RPA Associate with RNA Polymerase II at Different Stages of Transcription. Molecular Cell. 2011 Nov 4.
August/September 2011 Issue

  • Allen AT (G1), Maher KN, Wani KA, Betts KE, Chase DL. (2011). Coexpressed D1- and D2-Like Dopamine Receptors Antagonistically Modulate Acetylcholine Release in Caenorhabditis elegans. Genetics. 188(3):579-90. On Pubmed.
  • Van Rechem C, Black JC, Abbas TA, Allen A (G1), Rinehart CA, Yuan GC, Dutta A, Whetstine JR. (2011). The SKP1 – Cul1 – F-box and Leucine-rich repeat protein 4 (SCF-FbxL4) ubiquitin ligase regulates lysine demethylase 4A (KDM4A)/Jumonji domain-containing 2A (JMJD2A). J Biol Chem. 2011 Jul 8. [Epub ahead of print] On Pubmed.
  • Ferrero DM (G5), Lemon JK, Fluegge D, Pashkovski SL (G3), Korzan WJ, Datta SR, Spehr M, Fendt M, and Liberles SD. (2011). Detection and avoidance of a carnivore odor by prey. Proc Natl Acad Sci. 108 (27): 11235-11240. On Pubmed.
  • Kiely CM (G7), Marguerat S, Garcia JF, Madhani HD, Bähler J, Winston F. (2011). Spt6 is required for heterochromatic silencing in the fission yeast Schizosaccharomyces pombe. Mol Cell Biol. 2011 Aug 15. [Epub ahead of print] On Pubmed.
  • Marotta LLC (recent grad), Almendro V, Marusyk A, Shipitsin M, Schemme J, Walker SR, Bloushtain-Qimron N, Kim JJ, Choudhury SA, Maruyama R, Wu Z, Gönen M, Mulvey LA, Bessarabova MO, Huh SJ, Silver SJ, Kim SY, Park SY, Lee HE, Anderson KS, Richardson AL, Nikolskaya T, Nikolsky Y, Liu XS, Root DE, Hahn WC, Frank DA, Polyak K. (2011). The JAK2/STAT3 signaling pathway is required for growth of CD44+CD24- stem cell-like breast cancer cells in human tumors. J Clin Invest. 121(7):2723-35. On Pubmed.
  • Park E (G6) and Rapoport TA. (2011). Preserving the membrane barrier for small molecules during bacterial protein translocation. Nature. 473(7346):239-42. On Pubmed
  • Terzi N (recent grad), Churchman LS, Vasiljeva L, Weissman J, Buratowski S. (2011). H3K4 Trimethylation by Set1 Promotes Efficient Termination by the Nrd1-Nab3-Sen1 Pathway. Mol Cell Biol. 1(17):3569-83. On Pubmed.
June/July 2011 Issue
  • Cenik C (G3), Chua HN, Zhang H, Tarnawsky SP, Akef A, Derti A, Tasan M, Moore MJ, Palazzo AF, Roth FP. (2011). Genome analysis reveals interplay between 5′UTR introns and nuclear mRNA export for secretory and mitochondrial genes. PLoS Genet. 7(4):e1001366. On Pubmed.
  • Cooper KL*, Hu JK* (G7), ten Berge D, Fernandez-Teran M, Ros MA, Tabin CJ. (2011). Initiation of proximal-distal patterning in the vertebrate limb by signals and growth. Science. 332(6033):1083-6. On Pubmed.
  • Rahman S (G5), Sowa ME, Ottinger M, Smith JA, Shi Y, Harper JW, Howley PM. (2011). The Brd4 Extraterminal Domain Confers Transcription Activation Independent of pTEFb by Recruiting Multiple Proteins, Including NSD3. Mol Cell Biol. 31(13):2641-52. On Pubmed.

March/April 2011 Issue

  • Aldaye FA, Senapedis WT (recent grad), Silver PA, Way JC. (2010). A structurally tunable DNA-based extracellular matrix. J Am Chem Soc. 132(42):14727-9. On Pubmed.
  • Burrill DR (G4), Silver PA. (2011). Synthetic circuit identifies subpopulations with sustained memory of DNA damage. Genes Dev. 25(5):434-9. On Pubmed.
  • Zhang F*, Cong L (G2)*, Lodato S, Kosuri S, Church GM, Arlotta P. (2011). Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription. Nat Biotechnol. 29(2):149-53. Epub 2011 Jan 19. On Pubmed.
  • Park, E (G5) and Rapoport, TA (2011). Preserving the membrane barrier for small molecules during bacterial protein translocation. Nature. [In press]
  • Shibata Y (recent grad), Shemesh T, Prinz WA, Palazzo AF, Kozlov MM, Rapoport TA. (2010). Mechanisms determining the morphology of the peripheral ER. Cell. 143(5):774-88. On Pubmed.
  • Younan G*, Suber F (G3)*, Xing W, Shi T, Kunori Y, Abrink M, Pejler G, Schlenner SM, Rodewald HR, Moore FD Jr, Stevens RL, Adachi R, Austen KF, Gurish MF. (2010). The inflammatory response after an epidermal burn depends on the activities of mouse mast cell proteases 4 and 5. J Immunol. 185(12):7681-90. On Pubmed.
January/February 2011 Issue
  • Sephton CF, Cenik C (G3), Kucukural A, Dammer EB, Cenik B, Han YH, Dewey CM, Roth FP, Herz J, Peng J, Moore MJ, Yu G. (2010). Identification of neuronal RNA targets of TDP-43-containing Ribonucleoprotein complexes. J Biol Chem. [Epub ahead of print]. On Pubmed.
  • Gros J, Hu JK (G7), Vinegoni C, Feruglio PF, Weissleder R, Tabin CJ. (2010). WNT5A/JNK and FGF/MAPK pathways regulate the cellular events shaping the vertebrate limb bud. Curr Biol. 20(22):1993-2002. On Pubmed.
  • Diebold ML, Koch M, Loeliger E (G3), Cura V, Winston F, Cavarelli J, Romier C. (2010). The structure of an Iws1/Spt6 complex reveals an interaction domain conserved in TFIIS, Elongin A and Med26. EMBO J. 29(23):3979-91. On Pubmed.
  • Diebold ML, Loeliger E (G3), Koch M, Winston F, Cavarelli J, Romier C. (2010). Noncanonical tandem SH2 enables interaction of elongation factor Spt6 with RNA polymerase II. J Biol Chem. 285(49):38389-98. On Pubmed.
  • Moore MJ (graduated 2010), Wang Q, Kennedy CJ, Silver PA. (2010). An alternative splicing network links cell-cycle control to apoptosis. Cell. 142(4):625-36. On Pubmed.
  • Aldaye FA, Senapedis WT (G5), Silver PA, Way JC. (2010). A structurally tunable DNA-based extracellular matrix. J Am Chem Soc. 132(42):14727-9. On Pubmed.